fate mapping heatmap — fate_mapping • FateMapper

plot heatmap for lineage tracing barcodes in each cell type

Usage

fate_mapping(
  data,
  idx = "celltype",
  order_use = NULL,
  show_row = T,
  cluster_rows = F,
  cluster_cols = T,
  ...
)

data: data.frame, indicating lineage tracing data, first column should be lineage tracing barcodes, second column should be related cell type
idx: column name of cell type
order_use: order cell type
cluster_cols: boolean values determining if cols should be clustered
...: other pheatmap parameters
show_rownames: vector,indicating the order of cell types in the heatmap.
col: heatmap colors
cluster_row: boolean values determining if rows should be clustered

heatmap

fate_mapping(fate_test)
#> Error in `[.data.frame`(data, , idx): undefined columns selected