Calculate cell fate similarity among all cell types — cell_type_fate_similartiy • FateMapper

Calculate cell fate similarity among all cell types

Usage

cell_type_fate_similartiy(
  data,
  idx = "celltype",
  method = "spearman",
  plot = TRUE,
  out_similar_mt = FALSE,
  ...
)

Arguments

data: data.frame, indicating lineage tracing data, first column should be lineage tracing barcodes, second column should be related cell type
idx: column name of cell type
method: character, indicating which correlation coefficient (or covariance) is to be computed. One of "pearson", "kendall", or "spearman (default)": can be abbreviated.
plot: whether plot the heatmap
...: other pheatmap parameters

Value

barcodes correlation between cell type

Examples

cell_type_fate_similartiy(fate_test)
#> Error in `[.data.frame`(data, , idx): undefined columns selected